This paper studies an output feedback stabilization control framework for discrete-time linear systems with stochastic dynamics determined by an independent and identically distributed (i.i.d.) process. The controller is constructed with an ensemble Kalman filter (EnKF) and a feedback gain designed with our earlier result about state feedback control. The EnKF is also used for modeling the distribution behind the system, which is required in the feedback gain synthesis. The effectiveness of our control framework is demonstrated with numerical experiments. This study will become the first step toward the realization of learning type control using our stochastic systems control theory.