N. M. Amato, O. Bayazit, L. Dale, C. Jones, and D. Vallejo, Choosing Good Distance Metrics and Local Planners for Probabilistic Roadmap Methods, IEEE Transactions on Robotics and Automation, vol.16, issue.4, pp.442-447, 2000.

N. M. Amato, K. A. Dill, and G. Song, Using Motion Planning to Map Protein Folding Landscapes and Analyze Folding Kinetics of Known Native Structures, Journal of Computational Biology, vol.10, pp.239-255, 2003.

M. S. Apaydin, D. L. Brutlag, C. Guestrin, D. Hsu, J. Latombe et al., Stochastic Roadmap Simulation: An Efficient Representation and Algorithm for Analyzing Molecular Motion, Journal of Computational Biology, vol.10, pp.257-281, 2003.

H. Böhm and G. Schneider, Protein-Ligand Interactions: From Molecular Recognition to Drug Design, 2003.

P. Cheng and S. M. Lavalle, Reducing Metric Sensitivity in Randomized Trajectory Design, Proc. IEEE/RSJ Int. Conf. Intelligent Robots and Systems, pp.43-48, 2001.

J. Cortés and T. Siméon, Disassembly Path Planning for Objects with Articulated Parts, IFAC Workshop on Intelligent Assembly and Disassembly, 2007.

J. Cortés, T. Siméon, M. Remaud-siméon, and V. Tran, Geometric Algorithms for the Conformational Analysis of Long Protein Loops, Journal of Computational Chemistry, vol.25, issue.7, pp.956-967, 2004.

J. Cortés, T. Siméon, V. Ruiz-deangulo, D. Guieysse, M. Remaudsiméon et al., A Path Planning Approach for Computing Large-Amplitude Motions of Flexible Molecules, Bioinformatics, vol.21, pp.116-125, 2005.

M. A. Depristo, P. I. De-bakker, S. C. Lovell, and T. L. Blundell, Abinitio Construction of Polypeptide Fragments: Efficient Generation of Accurate, Representative Ensembles, Proteins, vol.51, pp.41-55, 2003.

A. Enosh, S. J. Fleishman, N. Ben-tal, and D. Halperin, Prediction and Simulation of Motion in Pairs of Transmembrane ?-Helices, Bioinformatics, vol.23, issue.2, pp.212-218, 2007.

A. Ettlin and H. Bleuler, Randomised Rough-Terrain Robot Motion Planning, Proc. IEEE/RSJ Int. Conf. Intelligent Robots and Systems, pp.5798-5803, 2006.

E. Ferré and J. Laumond, An Iterative Diffusion Algorithm for Part Disassembly, Proc. IEEE Int. Conf. Robotics and Automation, pp.3149-3154, 2004.

D. Guieysse, C. Salagnad, P. Monsan, M. Remaud-simeon, V. Tran et al., Towards a Novel Explanation of Pseudomonas Cepacia Lipase Enantioselectivity Via Molecular Modelling of the Enantiomer Trajectory Into the Active Site, Tetrahedron: Asymmetry, vol.14, pp.1807-1817, 2003.

P. Isto, M. Mantyla, and J. Tuominen, On Addressing the Run-Cost Variance in Randomized Motion Planners, Proc. IEEE Int. Conf. Robotics and Automation, pp.2934-2939, 2003.

M. Kalisiak and M. Van-de-panne, RRT-Blossom: RRT with a Local Flood-fill Behavior, Proc. IEEE Int. Conf. Robotics and Automation, pp.1237-1242, 2006.

J. Kim, J. M. Esposito, and V. Kumar, An RRT-Based Algorithm for Testing and Validating Multi-Robot Controllers, pp.249-256, 2005.

S. M. Lavalle, Rapidly-Exploring Random Trees: A New Tool for Path Planning, 1998.

S. M. Lavalle and J. J. Kuffner, Rapidly-Exploring Random Trees: Progress and Prospects, Algorithmic and Computational Robotics: New Directions (WAFR2000, pp.293-308, 2001.

S. R. Lindemann and S. M. Lavalle, Incrementally Reducing Dispersion by Increasing Voronoi Bias in RRTs, Proc. IEEE Int. Conf. Robotics and Automation, pp.3251-3257, 2004.

S. K. Lüdemann, R. R. Gabdoulline, V. Lounnas, and R. C. Wade, Substrate Access to Cytochrome P450cam Investigated by Molecular Dynamics Simulations: An Interactive Look at the Underlying Mechanisms, Internet Journal of Chemistry, vol.4, issue.6, 2001.

D. Parsons and J. Canny, Geometric Problems in Molecular Biology and Robotics, Proc. 2nd Int. Conf. on Intelligent Systems for Molecular Biology, pp.322-330, 1994.

E. Plaku and L. E. Kavraki, Quantitative Analysis of NearestNeighbors Search in High-Dimensional Sampling-Based Motion Planning, Proc. Workshop on the Algorithmic Foundations of Robotics, 2006.

V. Ruiz-de-angulo, J. Cortés, and T. Siméon, BioCD: An Efficient Algorithm for Self-Collision and Distance Computation between HighlyArticulated Molecular Models, Robotics: Science and, pp.6-11, 2005.

T. Schlick, Molecular Modeling and Simulation-An Interdisciplinary Guide, 2002.

C. Urmson and R. Simmons, Approaches for Heuristically Biasing RRT Growth, Proc. IEEE/RSJ Int. Conf. Intelligent Robots and Systems, pp.1178-1183, 2003.

A. Yershova, L. Jaillet, T. Siméon, and S. M. Lavalle, DynamicDomain RRTs: Efficient Exploration by Controlling the Sampling Domain, Proc. IEEE Int. Conf. Robotics and Automation, pp.3867-3872, 2005.
URL : https://hal.archives-ouvertes.fr/hal-01987538

M. Zhang and L. E. Kavraki, A New Method for Fast and Accurate Derivation of Molecular Conformations, Journal of Chemical Information and Computer Sciences, vol.42, issue.1, pp.64-70, 2002.