Using motion planning to map protein folding landscapes and analyze folding kinetics of known native structures, J. Comput. Biol, vol.10, pp.149-168, 2003. ,
Stochastic roadmap simulation: an efficient representation and algorithm for analyzing molecular motion, Proceedings of RECOMB, pp.12-21, 2002. ,
Stochastic conformational roadmaps for computing ensemble properties of molecular motion, Algorithmic Foundations of Robotics V (WAFR'02), pp.131-147, 2004. ,
Protein flexibility and drug design: how to hit a moving target, Cur. Opin. Chem. Biol, vol.6, pp.447-452, 2002. ,
A random loop generator for planning the motions of closed kinematic chains using PRM methods, Proceedings of IEEE International Conference on Robotics and Automation, pp.2141-2146, 2002. ,
Geometric algorithms for the conformational analysis of long protein loops, J. Comput. Chem, vol.25, pp.956-967, 2004. ,
Sampling-based motion planning under kinematic loop-closure constraints, Algorithmic Foundations of Robotics VI (WAFR'04), 2004. ,
Ab initio construction of polypeptide fragments: efficient generation of accurate, representative ensembles, Proteins, vol.51, pp.41-55, 2003. ,
Towards a novel explanation of Pseudomonas Cepacia lipase enantioselectivity via molecular modelling of the enantiomer trajectory into the active site, Tetrahedron: Asymmetry, vol.14, pp.1807-1817, 2003. ,
Rapid refinement of protein interfaces incorporating solvation: application to the docking problem, J. Mol. Biol, vol.276, pp.265-285, 1998. ,
Antibody multispecificity mediated by conformational diversity, Science, vol.299, pp.1362-1367, 2003. ,
CAPRI: a critical assessment of predicted interactions, Proteins, vol.52, pp.2-9, 2003. ,
Probabilistic roadmaps for path planning in high-dimensional configuration spaces, IEEE Trans. Robotics Autom, vol.12, pp.566-580, 1996. ,
A geometric approach to macromolecule-ligand interactions, J. Mol. Biol, vol.161, pp.269-288, 1982. ,
Robot Motion Planning, 1991. ,
Rapidly-exploring random trees: progress and prospects, Algorithmic and Computational Robotics: New Directions (WAFR2000), pp.293-308, 2001. ,
Molecular Modeling: Principles and Applications, 1996. ,
Sampling protein conformations and pathways, J. Comput. Chem, vol.25, pp.1133-1148, 2004. ,
Acidophilic adaptation of family 11 endo-?-1,4-xylanases: modeling and mutational analysis, Protein Sci, vol.13, pp.1209-1218, 2004. ,
Efficient maintenance and self-collision testing for kinematic chains, Proceedings of the 18th ACM Symposium on Computational Geometry, pp.43-52, 2002. ,
Efficient inverse kinematics of general 6R manipulators, IEEE Trans. Robotics Autom, vol.10, pp.648-657, 1994. ,
Fast algorithms and efficient statistics: N-point correlation Functions, Proceedings of MPA/MPE/ESO Conference on Mining the Sky, 2001. ,
An algorithm for determining the conformation of polypeptide segments in proteins by systematic search, Proteins, vol.1, pp.146-163, 1986. ,
Functional conformational changes of endo-1,4-xylanase II from Trichoderma reesei: a molecular dynamics study, Proteins, vol.31, pp.434-478, 1998. ,
Backbone dynamics in dihdydrofolate reductase complexes: role of loop flexibility in the catalytic mechanism, Biochemistry, vol.40, pp.9846-9859, 2001. ,
A fast flexible docking method using an incremental construction algorithm, J. Mol. Biol, vol.261, pp.470-489, 1996. ,
DOI : 10.1006/jmbi.1996.0477
A simplified inverse kinematic model calculation method for all 6R type manipulators, Proceedings of International Conference on Mechanical Design and Production, pp.15-25, 2000. ,
DOI : 10.1016/b978-008043711-8/50002-7
BioCD: an efficient algorithm for self-detection and distance computation between highly articulated molecular models, Proceedings of Robotics: Science and Systems, 2005. ,
A motion planning approach to flexible ligand binding, Proceedings of ISMB, pp.252-261, 1999. ,
Using motion planning to study RNA folding kinetics, Proceedings of RECOMB, pp.252-261, 2004. ,
DOI : 10.1145/974614.974648
URL : http://parasol.tamu.edu/publications/download.php?file_id=77
Analysis and assessment of comparative modeling predictions in CASP4, Proteins, Suppl, vol.5, pp.22-38, 2001. ,
Dynamic-domain RRTs: efficient exploration by controlling the sampling domain, Proc. IEEE Int. Conf. Robotics Automation, pp.3867-3872, 2005. ,
URL : https://hal.archives-ouvertes.fr/hal-01987538
A New Method for Fast and Accurate Derivation of Molecular Conformations, J. Chem. Inf. Comput. Sci, vol.41, pp.64-70, 2002. ,